![]() ![]() Sequences and annotations: FASTA (.fa), GenBank (.gb), EMBL (.emb), GFF(.gff).The results are saved as a set of annotations to a specified file in the GenBank format. UGENE Query Designer allows a user to analyze a nucleotide sequence using different algorithms ( Repeats finder, ORF finder, Weight matrix matching, etc.) at the same time imposing constraints on the positional relationship of the results obtained from the algorithms.Ī schema of the algorithms and constraints is either created from the GUI or edited as a plain text. The workflow schemas can be run both locally and remotely, either using the graphical interface or launched from the command line. Using the Workflow Designer one can also create custom workflow elements. ![]() The elements that a schema consists of correspond to the bulk of algorithms integrated into UGENE. UGENE Workflow Designer allows creating and running complex computational workflow schemas. The Alignment editor is used to visualize, analyze and modify a nucleic acid or protein multiple sequence alignment. Depending on the sequence type and the options selected the followings views can be presented inside the Sequence view window:Ģ. The Sequence view is used to visualize, analyze and modify nucleic acid or protein sequences. The software has three main views to display biological data on the user’s screen.ġ.
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